The IGVF Catalog integrates and links out to a number of trusted, external resources. Below is a consolidated list of sources that power various data panels across the app. Where possible, each panel also provides per-row source links and consistent attribution.
To keep results fast and focused, responses returned by our internal endpoints may be normalized and filtered before display. Typical processing includes:
Developers can inspect an endpoint's exact URL, applied filters, and transformation steps with the X-ray view in data panels where available.
| Object Type | Source | Link |
|---|---|---|
| Variants | FAVOR (dbSNP155) | Visit |
| Genes, Proteins, Transcripts, Human | GENCODE v43 | Visit |
| Genes, Proteins, Transcripts, Mouse | GENCODE m33 | Visit |
| Proteins | UniProt | Visit |
| QTLs | EBI QTL Catalogue | Visit |
| QTLs | AFGR | Visit |
| eQTLs | GTEx | Visit |
| pQTLs | UK Biobank Plasma Proteomic Profiles | Visit |
| Motifs | HOCOMOCO v11 | Visit |
| Allele specific binding | AdAstra | Visit |
| Allele specific binding | GVATdb | Visit |
| Protein Protein Interactions, Genetic Interactions | BioGRID | Visit |
| Protein Protein Interactions | IntAct | Visit |
| Gene Co-expression | CoXpressDB | Visit |
| Pathways | Reactome | Visit |
| GWAS studies | OpenTargets | Visit |
| Macromolecular Complexes | EBI Complex Portal | Visit |
| Varian/Gene/Drug Associations | PharmGKB | Visit |
| Rare Disease Genes | Orphanet | Visit |
| Variant-Gene-Disease Associations | ClinGen | Visit |
| Human-Mouse Orthologies | Mouse Genome Informatics | Visit |
| Coding Variants | dbNSFP 4.1 | Visit |
| Linkage Disequilibria | TopLD | Visit |
| Cancer Gene Dependency | DepMap | Visit |
| Protein variant phenotypes | VAMP-seq | Visit |