Region chr10:79286500-79287000

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10 tables
Jump to section:Coding Variant Effects (0+)...

Genome Browser

hg38

The yellow band marks the queried region. Reference tracks load first; available files from the first matching region records load afterward.

Region summary

Normalized coordinates: chr10:79286500-79287000

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Counting predicted E2G links and biological contexts across all prediction datasets...

Coding Variant Effects

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Gene Regulation

---Perturbations affecting accessibility in this regionView documentation about Perturbations affecting accessibility in this region

Which gene or element perturbations affect chromatin accessibility here? Regions retain each dataset's original coordinates and source.

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Showing all results, including non-significant results and missing significance calls. Threshold: defined by the source dataset; results use its supplied significance call. See the source file for the statistical rule.

Perturbed gene
Perturbed region
Perturbed element
Affected region
Biological context
CRISPR modality

---Element effects on gene expressionView documentation about Element effects on gene expression

Which regulatory elements in this region have measured perturbation effects on gene expression (, )?

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Showing all results, including non-significant results and missing significance calls. Threshold: p ≤ 0.05, using the adjusted p-value when available and the raw p-value otherwise. The Catalog computes this call for CRISPR effects on gene expression; it may differ from the submitting lab's hit list.

Biological context
Target Gene
Element Coordinates
Perturbed element
CRISPR Modality
Effect size (log₂ fold-change)

---ENCODE candidate cis-regulatory elementsView documentation about ENCODE candidate cis-regulatory elements

Which from the registry-wide ENCODE SCREEN set overlap this region, and what class is each one (boundaries and classes collapsed across cell types)?

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Chromosome
Start Position
End Position
Element ID
Annotation
Source

---Elements measured in reporter assaysView documentation about Elements measured in reporter assays

Reference-allele log2 fold change measurements for genomic elements overlapping this region. Alternative-allele assay results are available in portal downloads.

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Coordinates
Element Name
Element Type
Source Annotation
Biological context
Method

---Reporter assay measurementsView documentation about Reporter assay measurements

Which variants in this region (up to 10 kb) change regulatory activity in reporter assays (, )?

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Element Coordinates
Variant
Biological context
Method
Effect size (log₂ fold-change)
P-value (-log10)

---CRISPR effects of this variant on gene expressionView documentation about CRISPR effects of this variant on gene expression

Which variant-gene pairs in this region change gene expression when the variant is installed by CRISPR editing, by ?

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Variant
Gene
Biological context
CRISPR Modality
Effect size (log₂ fold-change)
Raw p-value (-log10)

---Observed allele-specific bindingView documentation about Observed allele-specific binding

Observed allele-specific transcription factor binding from and for variants overlapping this region. These rows include tests that found no allele-specific binding.

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Variant
Protein / Complex
Method
Class
Label
Motif

---Enhancer-gene predictionsView documentation about Enhancer-gene predictions

Which enhancers overlap this region, and what are their target genes and cell types? and models.

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Counting predicted E2G links and biological contexts across all prediction datasets...

Select predictions to add to the genome browser

Choose individual rows from the loaded table results. Selected rows appear as colored enhancer intervals; file tracks may use arcs to show enhancer-to-gene links. Selections preserve the table's gene or variant scope and active filters when you navigate the browser.

Biological context
Target Gene
Score
 
Model
Distance (Enhancer to Gene TSS)

---Variant-element predictionsView documentation about Variant-element predictions

Which variants in this region (up to 10 kb) are predicted to affect regulatory element activity, by ?

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Variant
Biological context
Model
Predicted effect size (log₂ fold-change)
Source

---Predicted allele-specific bindingView documentation about Predicted allele-specific binding

predictions of allele-specific transcription factor binding for variants overlapping this region.

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Variant
Protein / Complex
Method
Class
Label
Motif

Molecular Networks

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QTLs

---Molecular QTLsView documentation about Molecular QTLs

Gene, protein, splice, and chromatin-accessibility QTL associations for variants overlapping this region.

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Variant
Type
Gene
Gene/Protein/Peak
Biological context
Effect size

Phenotypes

---GWAS associationsView documentation about GWAS associations

associations for variants overlapping this region.

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Variant
Phenotype
Study ID
Study Source
P-value (-log10)
Effect size

---CRISPR screen effects on cellular phenotypeView documentation about CRISPR screen effects on cellular phenotype

Cellular phenotypes that changed when variants in this region were installed by an IGVF .

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Variant
Phenotype
Biological context
CRISPR Modality
Effect size
95% CI

---Variant scoresView documentation about Variant scores

and variant scores for variants overlapping this region.

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Variant
Phenotype
Method
Class
Biological context
Study ID

---Associated disease (ClinGen, Orphanet)View documentation about Associated disease (ClinGen, Orphanet)

Diseases associated with variants in this region from ClinGen and Orphanet.

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Variant
Disease
Gene
Assertion
PMIDs
Source