Region chr10:79286500-79287000

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7 tables

Genome Browser

hg38

Reference tracks plus IGVF/ENCODE browser files when available.

Region summary

Normalized coordinates: chr10:79286500-79287000

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Gene Regulation

Regulatory annotations, enhancer predictions, and functional measurements overlapping this region.

---Enhancer-Gene PredictionsView documentation about Enhancer-Gene Prediction

Which enhancers overlap this region, and what are their target genes and cell types? and models.

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Cell Type
Target Gene
Score
Enhancer Coordinates
Dataset
Source

---Regulatory Element-Gene MeasurementsView documentation about Regulatory Element-Gene Measurements

Which regulatory elements in this region have measured perturbation effects on gene expression (, )?

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Cell Type
Target Gene
Element Coordinates
CRISPR Modality
Effect Size (log2 Fold Change)
Raw p-value (-log10)

---ENCODE candidate cis-regulatory elements

Does this region overlap from ENCODE? SCREEN

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Chromosome
Start Position
End Position
Element ID
Annotation
Element Type

---Measured region activitiesView documentation about Measured region activities

Reference-allele log2 fold change measurements for genomic elements overlapping this region. Alternative-allele assay results are available in portal downloads.

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Coordinates
Element Name
Element Type
Source Annotation
Biosample
Method

---Variant effects on regulatory activityView documentation about Variant effects on regulatory activity

Which variants in this region (up to 10 kb) change regulatory activity in reporter assays (, ) or are predicted to by ?

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Variant
Biosample
Method
Class
log2 Fold Change
P-value (-log10)

---Variant-Genomic Element LinksView documentation about Variant-Genomic Element Links

Variants within this region linked to genomic elements by chromatin accessibility QTLs ().

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Variant
Genomic Element
Element Type
Coordinates
Biosample
Method
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Variant Summary

Variant evidence counts across methods for this region.

---Region Variant SummariesView documentation about Region Variant Summary

Total catalog variants overlapping this region, with counts grouped by evidence method.

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Method
Variant Count

QTLs

Molecular QTL associations for variants overlapping this region.

---Molecular QTLsView documentation about Molecular QTLs

Gene, protein, splice, and chromatin-accessibility QTL associations for variants overlapping this region.

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Variant
Type
Gene
Cell Type / Tissue
Effect Size
P-value (-log10)

Allele-Specific Binding

Observed and predicted allele-specific binding evidence for variants overlapping this region.

---Allele-Specific Binding EvidencesView documentation about Allele-Specific Binding Evidence

Observed and predicted transcription factor binding effects for variants overlapping this region, including , , and rows when available.

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Variant
Protein / Complex
Method
Class
Label
Motif

Phenotypes

Phenotype associations for variants overlapping this region.

---Region Phenotype AssociationsView documentation about Region Phenotype Associations

and other phenotype associations for variants overlapping this region.

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Variant
Trait
Method
Study ID
Study Source
P-value